V2_0.java [src/java/m/ghg/daycent] Revision: default Date:
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package m.ghg.daycent;
import csip.Config;
import csip.api.client.ModelDataServiceCall;
import csip.api.server.PayloadParameter;
import csip.api.server.ServiceException;
import csip.annotations.Description;
import csip.annotations.Name;
import csip.annotations.Options;
import csip.annotations.Resource;
import csip.utils.Parallel;
import gisobjects.GISObject;
import gisobjects.GISObjectFactory;
import gisobjects.db.GISEngineFactory;
import java.io.IOException;
import java.nio.file.Files;
import java.sql.Connection;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.HashMap;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import javax.ws.rs.Path;
import m.ghg.ApplicationResources;
import static m.ghg.ApplicationResources.*;
import org.codehaus.jettison.json.JSONException;
import org.codehaus.jettison.json.JSONObject;
/**
*
* @author sidereus, od
*/
@Name("Daycent simulation execution")
@Description("Daycent CSIP service")
@Path("m/daycent/2.0")
@Options(timeout = "P1H")
@Resource(from = ApplicationResources.class)
public class V2_0 extends V1_0 {
protected JSONObject rotation;
protected List<Integer> crop_id;
protected Collection<String> JSONparams;
@Override
protected void preProcess() throws ServiceException {
super.preProcess();
JSONparams = parameter().getNames();
}
@Override
protected void doProcess() throws Exception {
// Get centroid of shape, if it is not a point already. (If it's a point, the centroid is the point)
try (Connection conn = resources().getJDBC(GISDB_SQLSVR)) {
GISObject shape = GISObjectFactory.createGISObject(aoa_geometry, GISEngineFactory.createGISEngine(conn));
// getLat/Lon functions get point value or the centroid of the shape.
latlon[0] = shape.getLatitude();
latlon[1] = shape.getLongitude();
}
getJSONParams();
Parallel.run(Config.getBoolean("ghg.serial.datafetch", false),
() -> {
fetchClimate();
computeWeatherStats();
},
() -> {
fetchSoil();
countLayers(); // testing if we need the fix structure in Black et al. 2017
},
() -> {
createConfig("crop.100");
}
);
createConfig(getSite100());
createConfig("fix.100");
runDaycent();
runDaycentList();
}
static final Map<String, Map<String, String>> defMap = new HashMap() {
{
put("prdx", prdxDef);
put("ppdf1", ppdf1Def);
put("himax", himaxDef);
put("ppdf2", ppdf2Def);
put("pramn", pramnDef);
put("pramx", pramxDef);
}
};
protected void countLayers() {
try {
profileDepths = new LinkedList<>();
List<Double> profiles = Files.lines(workspace().getFile("soils.in").toPath())
.map(str -> str.split("\\s+"))
.map(str -> Double.parseDouble(str[1]))
.collect(Collectors.toList());
double[] defaultProfile = new double[]{10, 20, 15, 15, 30, 30, 30, 30, 30, 30};
double val = 0;
double bottom = profiles.get(profiles.size() - 1);
for (int i = 0; i < defaultProfile.length; i++) {
double prof = defaultProfile[i];
val += prof;
if (val == bottom) {
profileDepths.add(prof);
break;
} else if (val > bottom) {
double tmpval = val - prof;
profileDepths.add(bottom - tmpval);
break;
} else {
profileDepths.add(prof);
}
}
nlayer = profileDepths.size(); // - 2; // the first three layers are meshed into 1
} catch (IOException ex) {
throw new RuntimeException(ex.getMessage());
}
}
protected Map<String, Map<String, Double>> dictPopulation(Map<String, Map<String, Double>> hashmap, String s) throws ServiceException {
String[] parts = s.split("\\.");
String cropName = parts[1];
String parameterName = parts[2];
Double parameterValue = parameter().getDouble(s);
if (hashmap.containsKey(cropName)) {
hashmap.get(cropName).put(parameterName, parameterValue);
} else {
Map<String, Double> val1 = new HashMap<>();
val1.put(parameterName, parameterValue);
hashmap.put(cropName, val1);
}
return hashmap;
}
protected void fillCropValues() {
for (Map.Entry<String, Map<String, Double>> entry : crops.entrySet()) {
List<String> cropparamList = Arrays.asList("prdx", "ppdf1", "ppdf2", "himax");
for (String param : cropparamList) {
if (!entry.getValue().containsKey(param)) {
crops.get(entry.getKey()).put(param, Double.parseDouble(defMap.get(param).get(entry.getKey())));
}
}
}
}
protected void fillFileValues(List<String> paramList, Map<String, Map<String, Double>> hashmap, Map<String, String> defName) {
for (Map.Entry<String, Map<String, Double>> entry : hashmap.entrySet()) {
for (String param : paramList) {
if (!entry.getValue().containsKey(param)) {
hashmap.get(entry.getKey()).put(param, Double.parseDouble(defName.get(param)));
}
}
}
}
protected void getJSONParams() throws JSONException, ServiceException {
List<String> paramList = Arrays.asList("fwloss1", "fwloss2", "fwloss3", "fwloss4",
"dec32", "dec4", "dec52", "dec11", "dec12", "dec22", "dec21", "dec31", "dec51", "teff1", "teff2", "teff3", "teff4", "ps1s31",
"ps1s32", "ps2s31", "ps2s32");
List<String> lrrmList = Arrays.asList("basef");
for (String s : JSONparams) {
String[] parts = s.split("\\.");
if (parts.length > 1) {
String cropType = parts[0];
String fileName = parts[1];
if (cropType.equals("crop")) {
crops = dictPopulation(crops, s);
} else if (cropType.equals("param") && fileName.equals("fixes")) {
fixes = dictPopulation(fixes, s);
} else if (cropType.equals("param") && fileName.equals("lrrm")) {
lrrm = dictPopulation(lrrm, s);
}
}
}
fillFileValues(paramList, fixes, fixDef);
fillFileValues(lrrmList, lrrm, lrrmDef);
fillCropValues();
}
protected void fetchSoil() throws Exception {
ModelDataServiceCall mds = new ModelDataServiceCall()
.put(STREAM_FILE, fileAsJSON)
.put(soils.AoA.AOA_GEOMETRY, new JSONObject()
.put(TYPE, aoa_geometry.get(TYPE))
.put(COORDINATES, aoa_geometry.get(COORDINATES)))
.url(Config.getString("ghg.soilfile.url",
request().getCodebase() + "d/insoilfile/2.0"))
.call();
if (mds.serviceFinished()) {
mds.download("soils.in", workspace().getFile("soils.in"));
} else {
throw new ServiceException("GHG Soil service error: " + mds.getError());
}
}
}