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package nodes;

import java.io.IOException;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.stream.XMLStreamException;
import org.codehaus.jettison.json.JSONException;
import org.codehaus.jettison.json.JSONObject;
import org.xml.sax.SAXException;
import static utils.Constants.ID;
import static utils.Constants.NAME;
import utils.TranslatorException;

/**
 *
 * @author Brad
 */
public abstract class Residue {
  protected String name;
  protected String id;
  protected double residueAmount;

  public String getName() {
    return name;
  }

  public String getID() {
    return id;
  }

  public void setID(String key) {
    id = key;
  }

  public double getResidueAmount() {
    return residueAmount;
  }

  public void setResidueAmount(double residueAmount) {
    this.residueAmount = residueAmount;
  }

  public void readJSONData(JSONObject jres) throws JSONException {

    name = jres.getString(NAME);
    id = jres.getString(ID);
  }

  public abstract void parseLMODData(JSONObject data) throws XMLStreamException, ParserConfigurationException, SAXException, IOException, TranslatorException, JSONException;
}