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nbproject/ant-deploy.xml

@@ -20,30 +20,18 @@
     </target>
     <target name="-deploy-ant" if="deploy.ant.enabled" depends="-init,-check-credentials">
         <echo message="Deploying ${deploy.ant.archive} to ${Context(path)}"/>
-        <taskdef name="deploy" classname="org.apache.catalina.ant.DeployTask">
-            <classpath>
-                <pathelement path="${tomcat.home}/lib/catalina-ant.jar"/>
-                <pathelement path="${tomcat.home}/lib/tomcat-coyote.jar"/>
-                <pathelement path="${tomcat.home}/lib/tomcat-util.jar"/>
-                <pathelement path="${tomcat.home}/bin/tomcat-juli.jar"/>
-            </classpath>
-        </taskdef>
-        <deploy url="${tomcat.url}/manager/text" username="${tomcat.username}"
+        <taskdef name="deploy" classname="org.apache.catalina.ant.DeployTask"
+                 classpath="${tomcat.home}/server/lib/catalina-ant.jar"/>
+        <deploy url="${tomcat.url}/manager" username="${tomcat.username}"
                 password="${tomcat.password}" path="${Context(path)}"
                 war="${deploy.ant.archive}"/>
         <property name="deploy.ant.client.url" value="${tomcat.url}${Context(path)}"/>
     </target>
     <target name="-undeploy-ant" if="deploy.ant.enabled" depends="-init,-check-credentials">
         <echo message="Undeploying ${Context(path)}"/>
-        <taskdef name="undeploy"  classname="org.apache.catalina.ant.UndeployTask">
-            <classpath>
-                <pathelement path="${tomcat.home}/lib/catalina-ant.jar"/>
-                <pathelement path="${tomcat.home}/lib/tomcat-coyote.jar"/>
-                <pathelement path="${tomcat.home}/lib/tomcat-util.jar"/>
-                <pathelement path="${tomcat.home}/bin/tomcat-juli.jar"/>
-            </classpath>
-        </taskdef>
-        <undeploy url="${tomcat.url}/manager/text" username="${tomcat.username}" 
+        <taskdef name="undeploy"  classname="org.apache.catalina.ant.UndeployTask"
+                classpath="${tomcat.home}/server/lib/catalina-ant.jar"/>
+        <undeploy url="${tomcat.url}/manager" username="${tomcat.username}" 
                   password="${tomcat.password}" path="${Context(path)}"/>
     </target>
 </project>

nbproject/build-impl.xml

@@ -50,36 +50,6 @@
     </target>
     <target depends="-pre-init,-init-private,-init-user,-init-project,-init-macrodef-property" if="dist.ear.dir" name="-do-ear-init"/>
     <target depends="-pre-init,-init-private,-init-user,-init-project,-init-macrodef-property" name="-do-init">
-        <webproject1:property name="platform.home" value="platforms.${platform.active}.home"/>
-        <webproject1:property name="platform.bootcp" value="platforms.${platform.active}.bootclasspath"/>
-        <webproject1:property name="platform.compiler" value="platforms.${platform.active}.compile"/>
-        <webproject1:property name="platform.javac.tmp" value="platforms.${platform.active}.javac"/>
-        <condition property="platform.javac" value="${platform.home}/bin/javac">
-            <equals arg1="${platform.javac.tmp}" arg2="$${platforms.${platform.active}.javac}"/>
-        </condition>
-        <property name="platform.javac" value="${platform.javac.tmp}"/>
-        <webproject1:property name="platform.java.tmp" value="platforms.${platform.active}.java"/>
-        <condition property="platform.java" value="${platform.home}/bin/java">
-            <equals arg1="${platform.java.tmp}" arg2="$${platforms.${platform.active}.java}"/>
-        </condition>
-        <property name="platform.java" value="${platform.java.tmp}"/>
-        <webproject1:property name="platform.javadoc.tmp" value="platforms.${platform.active}.javadoc"/>
-        <condition property="platform.javadoc" value="${platform.home}/bin/javadoc">
-            <equals arg1="${platform.javadoc.tmp}" arg2="$${platforms.${platform.active}.javadoc}"/>
-        </condition>
-        <property name="platform.javadoc" value="${platform.javadoc.tmp}"/>
-        <fail unless="platform.home">Must set platform.home</fail>
-        <fail unless="platform.bootcp">Must set platform.bootcp</fail>
-        <fail unless="platform.java">Must set platform.java</fail>
-        <fail unless="platform.javac">Must set platform.javac</fail>
-        <fail if="platform.invalid">
- The J2SE Platform is not correctly set up.
- Your active platform is: ${platform.active}, but the corresponding property "platforms.${platform.active}.home" is not found in the project's properties files. 
- Either open the project in the IDE and setup the Platform with the same name or add it manually.
- For example like this:
-     ant -Duser.properties.file=&lt;path_to_property_file&gt; jar (where you put the property "platforms.${platform.active}.home" in a .properties file)
-  or ant -Dplatforms.${platform.active}.home=&lt;path_to_JDK_home&gt; jar (where no properties file is used) 
-  </fail>
         <condition property="have.tests">
             <or>
                 <available file="${test.src.dir}"/>
@@ -221,6 +191,15 @@
                 <length length="0" string="${endorsed.classpath}" when="greater"/>
             </and>
         </condition>
+        <condition else="false" property="jdkBug6558476">
+            <and>
+                <matches pattern="1\.[56]" string="${java.specification.version}"/>
+                <not>
+                    <os family="unix"/>
+                </not>
+            </and>
+        </condition>
+        <property name="javac.fork" value="${jdkBug6558476}"/>
         <condition property="junit.available">
             <or>
                 <available classname="org.junit.Test" classpath="${run.test.classpath}"/>
@@ -315,7 +294,7 @@
                 <property location="${build.dir}/empty" name="empty.dir"/>
                 <mkdir dir="${empty.dir}"/>
                 <mkdir dir="@{apgeneratedsrcdir}"/>
-                <javac debug="@{debug}" deprecation="${javac.deprecation}" destdir="@{destdir}" encoding="${source.encoding}" excludes="@{excludes}" executable="${platform.javac}" fork="yes" includeantruntime="false" includes="@{includes}" source="${javac.source}" srcdir="@{srcdir}" target="${javac.target}" tempdir="${java.io.tmpdir}">
+                <javac debug="@{debug}" deprecation="${javac.deprecation}" destdir="@{destdir}" encoding="${source.encoding}" excludes="@{excludes}" fork="${javac.fork}" includeantruntime="false" includes="@{includes}" source="${javac.source}" srcdir="@{srcdir}" target="${javac.target}">
                     <src>
                         <dirset dir="@{gensrcdir}" erroronmissingdir="false">
                             <include name="*"/>
@@ -352,7 +331,7 @@
             <sequential>
                 <property location="${build.dir}/empty" name="empty.dir"/>
                 <mkdir dir="${empty.dir}"/>
-                <javac debug="@{debug}" deprecation="${javac.deprecation}" destdir="@{destdir}" encoding="${source.encoding}" excludes="@{excludes}" executable="${platform.javac}" fork="yes" includeantruntime="false" includes="@{includes}" source="${javac.source}" srcdir="@{srcdir}" target="${javac.target}" tempdir="${java.io.tmpdir}">
+                <javac debug="@{debug}" deprecation="${javac.deprecation}" destdir="@{destdir}" encoding="${source.encoding}" excludes="@{excludes}" includeantruntime="false" includes="@{includes}" source="${javac.source}" srcdir="@{srcdir}" target="${javac.target}">
                     <src>
                         <dirset dir="@{gensrcdir}" erroronmissingdir="false">
                             <include name="*"/>
@@ -429,7 +408,7 @@
             <attribute default="" name="testmethods"/>
             <element name="customize" optional="true"/>
             <sequential>
-                <junit dir="${basedir}" errorproperty="tests.failed" failureproperty="tests.failed" fork="true" jvm="${platform.java}" showoutput="true" tempdir="${java.io.tmpdir}">
+                <junit dir="${basedir}" errorproperty="tests.failed" failureproperty="tests.failed" fork="true" showoutput="true" tempdir="${java.io.tmpdir}">
                     <test methods="@{testmethods}" name="@{testincludes}" todir="${build.test.results.dir}"/>
                     <syspropertyset>
                         <propertyref prefix="test-sys-prop."/>
@@ -452,7 +431,7 @@
             <element name="customize" optional="true"/>
             <sequential>
                 <property name="run.jvmargs.ide" value=""/>
-                <junit dir="${basedir}" errorproperty="tests.failed" failureproperty="tests.failed" fork="true" jvm="${platform.java}" showoutput="true" tempdir="${build.dir}">
+                <junit dir="${basedir}" errorproperty="tests.failed" failureproperty="tests.failed" fork="true" showoutput="true" tempdir="${build.dir}">
                     <batchtest todir="${build.test.results.dir}">
                         <fileset dir="${test.src.dir}" excludes="@{excludes},${excludes}" includes="@{includes}">
                             <filename name="@{testincludes}"/>
@@ -492,7 +471,7 @@
                     </fileset>
                 </union>
                 <taskdef classname="org.testng.TestNGAntTask" classpath="${run.test.classpath}" name="testng"/>
-                <testng classfilesetref="test.set" failureProperty="tests.failed" jvm="${platform.java}" listeners="org.testng.reporters.VerboseReporter" methods="${testng.methods.arg}" mode="${testng.mode}" outputdir="${build.test.results.dir}" suitename="csip-erosion" testname="TestNG tests" workingDir="${basedir}">
+                <testng classfilesetref="test.set" failureProperty="tests.failed" listeners="org.testng.reporters.VerboseReporter" methods="${testng.methods.arg}" mode="${testng.mode}" outputdir="${build.test.results.dir}" suitename="csip-erosion" testname="TestNG tests" workingDir="${basedir}">
                     <xmlfileset dir="${build.test.classes.dir}" includes="@{testincludes}"/>
                     <propertyset>
                         <propertyref prefix="test-sys-prop."/>
@@ -570,7 +549,7 @@
             <attribute default="" name="testmethods"/>
             <element name="customize" optional="true"/>
             <sequential>
-                <junit dir="${basedir}" errorproperty="tests.failed" failureproperty="tests.failed" fork="true" jvm="${platform.java}" showoutput="true" tempdir="${java.io.tmpdir}">
+                <junit dir="${basedir}" errorproperty="tests.failed" failureproperty="tests.failed" fork="true" showoutput="true" tempdir="${java.io.tmpdir}">
                     <test methods="@{testmethods}" name="@{testincludes}" todir="${build.test.results.dir}"/>
                     <syspropertyset>
                         <propertyref prefix="test-sys-prop."/>
@@ -595,7 +574,7 @@
             <element name="customize" optional="true"/>
             <sequential>
                 <property name="run.jvmargs.ide" value=""/>
-                <junit dir="${basedir}" errorproperty="tests.failed" failureproperty="tests.failed" fork="true" jvm="${platform.java}" showoutput="true" tempdir="${build.dir}">
+                <junit dir="${basedir}" errorproperty="tests.failed" failureproperty="tests.failed" fork="true" showoutput="true" tempdir="${build.dir}">
                     <batchtest todir="${build.test.results.dir}">
                         <fileset dir="${test.src.dir}" excludes="@{excludes},${excludes}" includes="@{includes}">
                             <filename name="@{testincludes}"/>
@@ -719,7 +698,7 @@
             <attribute default="${debug.classpath}" name="classpath"/>
             <element name="customize" optional="true"/>
             <sequential>
-                <java classname="@{classname}" fork="true" jvm="${platform.java}">
+                <java classname="@{classname}" fork="true">
                     <jvmarg line="${endorsed.classpath.cmd.line.arg}"/>
                     <jvmarg line="${runmain.jvmargs}"/>
                     <classpath>
@@ -751,9 +730,6 @@
                     <classpath>
                         <path path="@{classpath}"/>
                     </classpath>
-                    <bootclasspath>
-                        <path path="${platform.bootcp}"/>
-                    </bootclasspath>
                 </nbjpdastart>
             </sequential>
         </macrodef>
@@ -774,9 +750,7 @@
         </macrodef>
     </target>
     <target name="-init-debug-args">
-        <exec executable="${platform.java}" outputproperty="version-output">
-            <arg value="-version"/>
-        </exec>
+        <property name="version-output" value="java version &quot;${ant.java.version}"/>
         <condition property="have-jdk-older-than-1.4">
             <or>
                 <contains string="${version-output}" substring="java version &quot;1.0"/>
@@ -802,7 +776,7 @@
             <attribute default="${application.args.param}" name="args"/>
             <element name="customize" optional="true"/>
             <sequential>
-                <java classname="@{classname}" fork="true" jvm="${platform.java}">
+                <java classname="@{classname}" fork="true">
                     <jvmarg line="${endorsed.classpath.cmd.line.arg}"/>
                     <jvmarg line="${debug-args-line}"/>
                     <jvmarg value="-Xrunjdwp:transport=${debug-transport},address=${jpda.address}"/>
@@ -1407,9 +1381,6 @@
             <sourcepath>
                 <path path="${web.docbase.dir}"/>
             </sourcepath>
-            <bootclasspath>
-                <path path="${platform.bootcp}"/>
-            </bootclasspath>
         </nbjpdaconnect>
     </target>
     <target if="do.display.browser.debug.old" name="debug-display-browser-old">
@@ -1532,7 +1503,7 @@
             -->
     <target depends="init" if="have.sources" name="javadoc-build">
         <mkdir dir="${dist.javadoc.dir}"/>
-        <javadoc additionalparam="${javadoc.additionalparam}" author="${javadoc.author}" charset="UTF-8" destdir="${dist.javadoc.dir}" docencoding="UTF-8" encoding="${javadoc.encoding.used}" executable="${platform.javadoc}" failonerror="true" noindex="${javadoc.noindex}" nonavbar="${javadoc.nonavbar}" notree="${javadoc.notree}" private="${javadoc.private}" source="${javac.source}" splitindex="${javadoc.splitindex}" use="${javadoc.use}" useexternalfile="true" version="${javadoc.version}" windowtitle="${javadoc.windowtitle}">
+        <javadoc additionalparam="${javadoc.additionalparam}" author="${javadoc.author}" charset="UTF-8" destdir="${dist.javadoc.dir}" docencoding="UTF-8" encoding="${javadoc.encoding.used}" failonerror="true" noindex="${javadoc.noindex}" nonavbar="${javadoc.nonavbar}" notree="${javadoc.notree}" private="${javadoc.private}" source="${javac.source}" splitindex="${javadoc.splitindex}" use="${javadoc.use}" useexternalfile="true" version="${javadoc.version}" windowtitle="${javadoc.windowtitle}">
             <classpath>
                 <path path="${javac.classpath}:${j2ee.platform.classpath}"/>
             </classpath>

nbproject/project.properties

@@ -139,7 +139,7 @@
 j2ee.copy.static.files.on.save=true
 j2ee.deploy.on.save=false
 j2ee.platform=1.6-web
-j2ee.platform.classpath=${j2ee.server.home}/lib/annotations-api.jar:${j2ee.server.home}/lib/catalina-ant.jar:${j2ee.server.home}/lib/catalina-ha.jar:${j2ee.server.home}/lib/catalina-tribes.jar:${j2ee.server.home}/lib/catalina.jar:${j2ee.server.home}/lib/ecj-4.2.2.jar:${j2ee.server.home}/lib/el-api.jar:${j2ee.server.home}/lib/jasper-el.jar:${j2ee.server.home}/lib/jasper.jar:${j2ee.server.home}/lib/jsp-api.jar:${j2ee.server.home}/lib/servlet-api.jar:${j2ee.server.home}/lib/tomcat-api.jar:${j2ee.server.home}/lib/tomcat-coyote.jar:${j2ee.server.home}/lib/tomcat-dbcp.jar:${j2ee.server.home}/lib/tomcat-i18n-es.jar:${j2ee.server.home}/lib/tomcat-i18n-fr.jar:${j2ee.server.home}/lib/tomcat-i18n-ja.jar:${j2ee.server.home}/lib/tomcat-jdbc.jar:${j2ee.server.home}/lib/tomcat-util.jar
+j2ee.platform.classpath=${j2ee.server.home}/lib/annotations-api.jar:${j2ee.server.home}/lib/catalina-ant.jar:${j2ee.server.home}/lib/catalina-ha.jar:${j2ee.server.home}/lib/catalina-storeconfig.jar:${j2ee.server.home}/lib/catalina-tribes.jar:${j2ee.server.home}/lib/catalina.jar:${j2ee.server.home}/lib/ecj-4.4.1.jar:${j2ee.server.home}/lib/el-api.jar:${j2ee.server.home}/lib/jasper-el.jar:${j2ee.server.home}/lib/jasper.jar:${j2ee.server.home}/lib/jsp-api.jar:${j2ee.server.home}/lib/servlet-api.jar:${j2ee.server.home}/lib/tomcat-api.jar:${j2ee.server.home}/lib/tomcat-coyote.jar:${j2ee.server.home}/lib/tomcat-dbcp.jar:${j2ee.server.home}/lib/tomcat-i18n-es.jar:${j2ee.server.home}/lib/tomcat-i18n-fr.jar:${j2ee.server.home}/lib/tomcat-i18n-ja.jar:${j2ee.server.home}/lib/tomcat-jdbc.jar:${j2ee.server.home}/lib/tomcat-jni.jar:${j2ee.server.home}/lib/tomcat-spdy.jar:${j2ee.server.home}/lib/tomcat-util-scan.jar:${j2ee.server.home}/lib/tomcat-util.jar:${j2ee.server.home}/lib/tomcat-websocket.jar:${j2ee.server.home}/lib/websocket-api.jar
 j2ee.server.type=Tomcat
 jar.compress=true
 javac.classpath=\
@@ -275,7 +275,7 @@
 javadoc.windowtitle=
 lib.dir=${web.docbase.dir}/WEB-INF/lib
 persistence.xml.dir=${conf.dir}
-platform.active=JDK_1.8
+platform.active=default_platform
 project.csip-core=../csip-core
 reference.csip-core.jar=${project.csip-core}/dist/csip-core.jar
 resource.dir=setup

nbproject/project.xml

@@ -10,7 +10,6 @@
         <data xmlns="http://www.netbeans.org/ns/web-project/3">
             <name>csip-erosion</name>
             <minimum-ant-version>1.6.5</minimum-ant-version>
-            <explicit-platform explicit-source-supported="true"/>
             <web-module-libraries>
                 <library dirs="200">
                     <file>${libs.CSIP-Jersey-2.16.classpath}</file>

src/java/m/weps/V1_3_1.java

@@ -45,10 +45,10 @@
 @Path("m/weps/1.3.1")
 @Polling(first = 25000, next = 2000)
 
-// weps
-@Resource(type = EXECUTABLE, file = "/bin/${arch}/weps-1.3.9", id = WEPS_139)
-//@Resource(type = EXECUTABLE, file = "/bin/${csip.arch}/weps", id = WEPS_139)
-////@Resource(type = EXECUTABLE, file = "/bin/lin-amd64/weps-1.3.9", id = WEPS_139)
+// weps, weps.version is in the csip-conf.file
+@Resource(type = EXECUTABLE, file = "/bin/${arch}/${weps.version}/weps", id = WEPS_EXE)
+//@Resource(type = EXECUTABLE, file = "/bin/${csip.arch}/weps", id = WEPS_EXE)
+////@Resource(type = EXECUTABLE, file = "/bin/lin-amd64/weps-1.3.9", id = WEPS_EXE)
 // cligen
 @Resource(type = EXECUTABLE, file = "/bin/${arch}/cligen", id = CLIGEN)
 //@Resource(type = EXECUTABLE, file = "/bin/lin-amd64/cligen", id = CLIGEN)
@@ -64,10 +64,14 @@
 @Resource(type = FILE, file = "/data/interpolation_boundary.pol", id = BOUNDARY_POL)
 // report
 @Resource(type = FILE, file = "/data/weps_report.json", id = REPORT_JSON_ID)
+
+// Output
+@Resource(type = OUTPUT, file = "stir_energy.out sci_energy.out *stdout.txt *stderr.txt")
+
 public class V1_3_1 extends ModelDataService {
 
     static final String REPORT_JSON_ID = "weps_report";
-    static final String WEPS_139 = "weps-1.3.9";
+    static final String WEPS_EXE = "weps";
     static final String CLIGEN = "cligen";
     static final String WINDGEN = "windgen";
     static final String INTERPOLATE = "interpolate";
@@ -196,7 +200,7 @@
             // run WEPS model
             // model call uses the following cmd line args
             // /weps -W1 -u0 -I2 -t1 -P./ >stdout.txt 2>stderr.txt
-            Executable exe = getResourceExe(WEPS_139);
+            Executable exe = getResourceExe(WEPS_EXE);
             exe.setArguments("-W1", "-u0", "-I2", "-t1", "-T1", "-P./");
             if (cropCalibrationMode) {
                 // C15 tells WEPS to perform up to 15 calibration cycles for convergence, could do fewer cycles
@@ -223,14 +227,13 @@
     }
 
 
-    @Override
-    protected void postProcess() throws Exception {
-        putResult(new File(getWorkspaceDir(), "stir_energy.out"));
-        putResult(new File(getWorkspaceDir(), "sci_energy.out"));
-        putResult(new File(getWorkspaceDir(), WEPS_139 + "-stdout.txt"));
-        putResult(new File(getWorkspaceDir(), WEPS_139 + "-stderr.txt"));
-
-    }
+//    @Override
+//    protected void postProcess() throws Exception {
+//        putResult(new File(getWorkspaceDir(), "stir_energy.out"));
+//        putResult(new File(getWorkspaceDir(), "sci_energy.out"));
+//        putResult(new File(getWorkspaceDir(), WEPS_EXE + "-stdout.txt"));
+//        putResult(new File(getWorkspaceDir(), WEPS_EXE + "-stderr.txt"));
+//    }
 
     /////////////////////////////////////////////////////////////////////////////
 

web/META-INF/csip-conf.json

@@ -1,3 +1,4 @@
 {
-    "csip-erosion.version": "$version: 0.2.55 c15013549a75 2016-05-10 wlloyd@titan, built at 2016-05-10 11:53 by wlloyd$"
+    "csip-erosion.version": "$version: 0.2.55 c15013549a75 2016-05-10 wlloyd@titan, built at 2016-05-10 11:53 by wlloyd$",
+    "weps.version" : "1.3.9"
 }